2026-08-20T17:13:28Z https://yabu.me Luke Pembleton https://yabu.me/npub1rr3mz6ywnww97e3g33kghatgtqkwet3rc922dj0apfptzgu3pawqlyl608 https://cdn.masto.host/genomicsocial/accounts/avatars/110/696/106/207/573/559/original/06ef86e9bb37f442.jpeg https://cdn.masto.host/genomicsocial/accounts/avatars/110/696/106/207/573/559/original/06ef86e9bb37f442.jpeg https://yabu.me/nevent1qqs0hfmwanc5kadfr2ju8c8udtugvnsyugru6qcf3grj2phpw6fjwqczyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84ceh0k2m In reply to <a href='/nevent1qqs2kqxx72gn2hgx97m9tycdpzhvmen33fjlhy0963sa679y7s46qcczh6f9s'>nevent1q…6f9s</a><br/>_________________________<br/><br/>Hopefully this helps 👍 I&#39;m sure you can go more fancy, but its a good example starting point. <br/>#rstats<br/> <img src="https://cdn.masto.host/genomicsocial/media_attachments/files/116/318/830/598/782/421/original/2c70320e41f3952e.png"> <br/> <img src="https://cdn.masto.host/genomicsocial/media_attachments/files/116/318/830/587/266/220/original/938f85ebd0e76a5d.png"> <br/> 2026-03-30T15:28:23Z https://yabu.me/nevent1qqs9f9vtjl0yu9ec7exrg2wxtzhspjw03fagmmg5ccjctzgyty3qh7gzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84c8s5pr5 Really enjoying the concept of using yaml config files with my #rstats scripts (an idea I took from my r targets pipelines), instead of hardcoding inputs in the script itself, or having inputs and params as command line variables. Makes it easy to move between projects, keeps a record of what was used etc. happy days! 😀 2026-03-29T23:29:38Z https://yabu.me/nevent1qqszfgnwgt2j3k3p6fe55uf75l000fqqa3edgn7a8q0u8ghyphjz6qszyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cz4twcu In reply to <a href='/nevent1qqspx0ye95jtucmnu20hsps6dfclc48nj7ugptyqxqln3cfmal37p8qa2r4f0'>nevent1q…r4f0</a><br/>_________________________<br/><br/>what did you end up going with? It’s behind a paywall for me. 2026-02-10T04:27:30Z https://yabu.me/nevent1qqsw3jv3k4t4kkdgjwulsrex9vfmnfng2ev5vt8z6vkzhptsrh07t5qzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84c60yqej In reply to <a href='/nevent1qqspxyh9x0auyr8d9zuhj4nlnaacu2shx0amkmmacetj9lqzkupzacs2ulca0'>nevent1q…lca0</a><br/>_________________________<br/><br/>haha that&#39;s because Dan thinks the answer to all life&#39;s problems is {targets}. Whilst I admit, I do use it regularly, and it has solved a lot, it&#39;s not very suited in this situation when hacking away at some early development code that isn&#39;t suited yet to wrapping into a function and our source file.<br/> <img src="https://cdn.masto.host/genomicsocial/media_attachments/files/115/673/135/737/460/191/original/4721c76e3e0178fc.jpg"> <br/> 2025-12-06T14:39:42Z https://yabu.me/nevent1qqsfs5rv44n0w2aqvqgd7rmgnrsswdktxynjymct7trc7jn5xe89zzszyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84caqdu0e Anyone know why pasting multi-line R code into the terminal suddenly breaks? A long loop won’t paste/execute cleanly, I just end up stuck with a trailing +. If I paste it in smaller chunks it works fine. Any fix for this?<br/>#RStats 2025-12-05T23:32:43Z https://yabu.me/nevent1qqsgy5lp8j4z6plzsd3e9qgp2fjep765s37y6883r02w380ead48uxgzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84c3erpsc What do you do when your coffee goes cold? 2025-08-11T02:02:19Z https://yabu.me/nevent1qqs24zllfcxddf6qw8f6mtvu2a8jlys4xsd8wjleqfgjema7euv0klqzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84ca34jg7 In reply to <a href='/nevent1qqs04k6ar8ktuj8ly82mwkl0xeks2mla7emmrxnevvn6mzseyqleaqq2spgns'>nevent1q…pgns</a><br/>_________________________<br/><br/>the strokes!!! 2025-08-07T00:23:58Z https://yabu.me/nevent1qqs8ptvmhm6eq9hayz3k3awwgfhl07c6mt8ec8vjd20he4d5waktr5szyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84c0anths In reply to <a href='/nevent1qqsyxvdj03263pyka6y5u979flkz59mme9arhadpt5f4362tdsr8sts3r0ztp'>nevent1q…0ztp</a><br/>_________________________<br/><br/>whats the Macquarie app like? Can you ‘cover’ transactions like you can in the UP app? 2025-08-01T10:30:21Z https://yabu.me/nevent1qqswavked62cr2xcu8a92mn076sz9pzuzhn6vwrk43dhg3jydqtzztszyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84ck26n9p In reply to <a href='/nevent1qqsyxvdj03263pyka6y5u979flkz59mme9arhadpt5f4362tdsr8sts3r0ztp'>nevent1q…0ztp</a><br/>_________________________<br/><br/>so I take it you were one of many that replied to the ‘what’s new’ post with the turd 💩 emoji 😉 2025-08-01T10:26:38Z https://yabu.me/nevent1qqspfu86hx5ukehssnzvmradccuf2hg7w7myulxgz7eufw3ew5nda9qzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84ccapsrk In reply to <a href='/nevent1qqs8yjt8z8symv0sqqdmghhq4gt0xj9t3r2l6kq776x660vdsghwg0qxyrwl3'>nevent1q…rwl3</a><br/>_________________________<br/><br/>brilliant I wondered if that was it. It looks great. Thank you. How much is the lifetime subscription? I assume you went that pathway? 2025-05-21T01:23:39Z https://yabu.me/nevent1qqs27fx5x87ml3s0x5kemuvzg53eqeaqz97qr8c6km6ppx9sl0dq6wszyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84ctsuaxq In reply to <a href='/nevent1qqsq4dxv7r6z9a5ueg7ex38xahqru6mtjvae2l00mv2h794e6pwlg6ccjc2px'>nevent1q…c2px</a><br/>_________________________<br/><br/>what are you using to get these cool effects? 2025-05-20T16:42:16Z https://yabu.me/nevent1qqs9hdffrdkjhz7ptauplh42qt34v5pagt2qnvnf9v0ry7rgzdthpmqzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cs5rrl9 Does anyone use #duckdb as a database for #genomic sequence data, i.e. sample metadata, fastq &amp; vcf file paths etc. and have it sit in a s3 bucket or ftp server to then query from, both within cloud compute and from local compute? 2025-03-02T11:43:26Z https://yabu.me/nevent1qqst6ce5z8w74kqj8cddhu4l69m2kgfsv7vjqy7cnv9598y308hhvhszyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cwz7eet In reply to <a href='/nevent1qqs2nl76uundaql76lwud4vej8ftgrnt22swnqdzpzcl2s4kr2q3mncmmxdpr'>nevent1q…xdpr</a><br/>_________________________<br/><br/>you mean cool cool right 😉<br/><video controls width="100%" class="max-h-[90vh] bg-neutral-300 dark:bg-zinc-700"><source src="https://cdn.masto.host/genomicsocial/media_attachments/files/113/772/959/665/493/321/original/3f23ae50e7f61da4.mp4"></video><br/> 2025-01-05T00:40:07Z https://yabu.me/nevent1qqsy29uwjuwr40llasqc7c3nuwj8ufcun34fs7nqynek5c803jyawqszyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84c6quwqz #internet #Enshitiffication<br/> <img src="https://cdn.masto.host/genomicsocial/media_attachments/files/113/757/343/914/880/728/original/9ff46a1bff5f2b83.jpeg"> <br/> 2025-01-02T06:37:49Z https://yabu.me/nevent1qqst6ynrxnt6mr5nn6ccrg3x8e4nhthnvpld4enm7vetgqrwtf893uqzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84c5ugm9l This is what I have added to my .bashrc file<br/><br/>alias untar=&#34;tar xvf&#34; <br/>alias untgz=&#34;tar xvzf&#34; <br/>alias untargz=&#34;tar xvzf&#34; <br/>alias unbz2=&#34;tar xvjf&#34;<br/><br/>#Linux #Bash #bioinformatics<br/> <img src="https://cdn.masto.host/genomicsocial/media_attachments/files/113/738/926/261/643/568/original/a9718c808fa7520b.jpeg"> <br/> 2024-12-30T00:25:59Z https://yabu.me/nevent1qqs9wez7prru4p4d522ydltcjgaw483v889rzymd6zqsvc73vw4avjqzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84caz9hnm In reply to <a href='/nevent1qqsgec3tl3ks24nkwzwpj4v33kxf73mhwyxg374p53fefmasrfat6wqq4fluq'>nevent1q…fluq</a><br/>_________________________<br/><br/>ohhh I think that might have done it 👍 thanks heaps! brightness &amp; contrast adjustments + dither + purple colour + colour scheme adjustment (using <a href="https://farbenfroh.io">https://farbenfroh.io</a>) + resize. I&#39;m sure there is a more direct way, but it worked 😀 this tiled as a wallpaper is brilliant.<br/> <img src="https://cdn.masto.host/genomicsocial/media_attachments/files/113/716/910/643/920/492/original/fe3d1619dc0a11d1.png"> <br/> 2024-12-26T03:05:56Z https://yabu.me/nevent1qqs9rw7dt8524cneezhfggul9pyyqyuh9n7x5skh7jj0vx390feqdvszyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84crgzfgw So I’ve resettled on my final wallpaper - this small #rstats hex sticker collage as your desktop #wallpaper (with tile to fit) the effect is amazing 🤩 Bit of colour filtering to match your style and it’s even better. <br/><br/>But… I can’t remember how I created the final purple version with the pixelated blended colour effect, from the original (external source) faded blue version. <br/><br/>Does anyone know what filters in #GIMP I could apply to achieve this again with another image.<br/> <img src="https://cdn.masto.host/genomicsocial/media_attachments/files/113/716/187/999/297/224/original/c51edd2efe0bafb7.png"> <br/> <img src="https://cdn.masto.host/genomicsocial/media_attachments/files/113/716/188/020/280/868/original/a3b71fb96920473b.png"> <br/> 2024-12-26T00:02:09Z https://yabu.me/nevent1qqsvc60nx2n3vldqjyr90cxxpvcg07p4j4z7gmeu9mkrsakvf8c88gqzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84ctqagur In reply to <a href='/nevent1qqsyprs2nsmwjapjct63xzjys4lqslqzt2esn6utv86pwxyq3s9n7ucwz5dxh'>nevent1q…5dxh</a><br/>_________________________<br/><br/>I guess <span itemprop="mentions" itemscope itemtype="https://schema.org/Person"><a itemprop="url" href="/npub1fppvh9gtt5tflkj2nm5zxe23csgp54206a39x4ah7jhp60c6t20q2ngtzp" class="bg-lavender dark:prose:text-neutral-50 dark:text-neutral-50 dark:bg-garnet px-1"><span>danwwilson :rstats:</span> (<span class="italic">npub1fpp…gtzp</span>)</a></span> will be in the same pickle with the rstate.me instance. Hopefully there is a pathway forwards, as they are both really critical instances for our community. 2024-11-28T23:22:16Z https://yabu.me/nevent1qqs8v9nmpzfxn7qh2v8ff9wfpt5hslkfyjy20mc9wfwt4spyvkma06gzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cclu8yx Anyone in Australia 🦘 have recommendations for a reputable seller of the GBS-Control for upscaling retro gaming consoles like the #PS2?<br/><br/>#retrogaming 2024-10-18T23:06:31Z https://yabu.me/nevent1qqsx0vdt2adhh54cthn8wpwj4lsa54qrqgkg9vga7wnmxka738emzhszyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cmmcrp7 Probably should have known this earlier, but in #rstats you can pipe |&gt; into View(), allowing you to interactively view the output of a function or series of dplyr manipulations in the VSCode or RStudio GUI viewer without having to save to an object first.<br/><video controls width="100%" class="max-h-[90vh] bg-neutral-300 dark:bg-zinc-700"><source src="https://cdn.masto.host/genomicsocial/media_attachments/files/113/127/370/824/699/096/original/10278327ab494ac1.mp4"></video><br/> 2024-09-13T00:18:12Z https://yabu.me/nevent1qqsrtfszf40ddhupme3tta08fr7n3ekneet6v82h5yzjw4nareedadszyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cdl60fu Hang on what happened to August??<br/> <img src="https://cdn.masto.host/genomicsocial/media_attachments/files/113/078/417/157/375/754/original/372fd1c7bde9b9f2.jpeg"> <br/> 2024-09-04T08:48:54Z https://yabu.me/nevent1qqs278cemnt3cahzedt42l5h2uv5ksu8ldw3gjmttazv8qj6yfv45cczyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84c9s55j9 In reply to <a href='/nevent1qqs9v4ygv3s3pvxxym0nzf7nxm7v7rcuh75phr5fne8w34f750atj9sanlep7'>nevent1q…lep7</a><br/>_________________________<br/><br/>you can get a laptop for that and it folds too 🤣 2024-09-04T05:33:09Z https://yabu.me/nevent1qqsqu2gs23rwzt867h4nsgz7z2070aawfcs2p3cdaxgj0cya85seppgzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cr8ef09 In reply to <a href='/nevent1qqsprhkf8s487v0x39tt8xw99etq9dtvd80z5wq4gqyn8uzft7j8heqnw5tfx'>nevent1q…5tfx</a><br/>_________________________<br/><br/>was going to say if you got desperate you could always grab cooking string from the green or red shops. 2024-08-25T01:41:24Z https://yabu.me/nevent1qqsp5g9mapxcg2fksyuknvgsran27r2d26acnwy2mqm8jfsf825ul4gzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cwknvd0 What’s your #rstats #ROrigin story? I started my PhD in 2011 and initially was using Excel macros 😱 to perform optimal genetic combination selection, taking over all the office PCs at night for pseudo parallel processing. Within a few months I attended an internal 1day quantitative breeding course which used R. I was immediately hooked 🤩 everything felt so natural and I rewrote all my analyses the next day in R. 2years later I successfully submitted my first pkg to CRAN, &amp; the rest is history 🥳 2024-08-19T01:18:55Z https://yabu.me/nevent1qqs0m8uz6kyk6yw33c83e2lsf7s4ft2xktjuy2xexzxecdf02vsczjqzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84c5mwh4t In reply to <a href='/nevent1qqsvr6fprx62vavhn425h4qs2wfsl5ngkdy6sztk9fdu67lhn6r7vsc020t8y'>nevent1q…0t8y</a><br/>_________________________<br/><br/>I remember waiting for my nexus 5 to arrive many years ago and monitoring the tracking too, only for it to be stolen from my front door soon after delivery... 2024-08-19T00:37:09Z https://yabu.me/nevent1qqs2afc99dr8ytgrpudyllyjym2fxhalk9rgaz85kp6gljhzuermaqqzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84clul5ac In reply to <a href='/nevent1qqsdrp2yaju84a9vjjq746ygz9xmxdfe66rpw3qv3zjf325yxtl3desqct47v'>nevent1q…t47v</a><br/>_________________________<br/><br/>where have you been ordering your HGST drives from? I’ve always found them more difficult to source down under than other brands. 2024-08-13T03:10:04Z https://yabu.me/nevent1qqs0qqd6vtgy4jfam40trr7vtnp8mr2de4hpw8un68tuwg75e9ydg5gzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cn0tpaa In reply to <a href='/nevent1qqs9gvxzzy2f2lp2elgzpvrjljhxmds9tcm9yjhjh6sk36wjl6mx3jq54lqh8'>nevent1q…lqh8</a><br/>_________________________<br/><br/>Jealous! all this talk of native Linux setups. I am still unfortunately too reliant on the MS Office suite daily, particularly around work collaboration, that I have never been able to to successful last on a native Linux system for work. WSL is my compromise. 2024-08-08T00:17:40Z https://yabu.me/nevent1qqswwj9h95usnrncldwqpcxhzdrsvl6fl8lklrvhal2946hzst4f9agzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cy2mhs4 In reply to <a href='/nevent1qqsfq93u682hnta39rlvjqmfaunxgg22csuvg3h4g904ez2plfre8egzy0560'>nevent1q…0560</a><br/>_________________________<br/><br/>Here are the current designs if you would prefer to continuing engaging here rather than GitHub.<br/> <img src="https://cdn.masto.host/genomicsocial/media_attachments/files/112/906/709/793/355/197/original/1eb3a2d55525ffd6.png"> <br/> 2024-08-05T01:01:15Z https://yabu.me/nevent1qqsfq93u682hnta39rlvjqmfaunxgg22csuvg3h4g904ez2plfre8egzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cl32y60 In reply to <a href='/nevent1qqst5hctmsq6eefm5gecds58h8pc9n6p70q20rs0ugx3clhfsm2xcrs8a6rn8'>nevent1q…6rn8</a><br/>_________________________<br/><br/>Ok, so I have reworked the wording and made a few more designs. I have also set it up as a GitHub repo so that others can collaborate. If you have alt design suggestions please open an issue, or submit a pull request, would love for this to be a community effort. <br/><br/>#rstats<br/><br/><a href="https://github.com/lpembleton/aqw">https://github.com/lpembleton/aqw</a> 2024-08-05T01:00:48Z https://yabu.me/nevent1qqst5hctmsq6eefm5gecds58h8pc9n6p70q20rs0ugx3clhfsm2xcrszyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cdxfa6p In reply to <a href='/nevent1qqstkjedqrr9af7kuk8zwze6hqzudnq80ke93kx8c4cv77uwe9wlm8s4jzn0z'>nevent1q…zn0z</a><br/>_________________________<br/><br/>on it! new design coming soon 👍 2024-08-04T14:50:03Z https://yabu.me/nevent1qqsznaj9zht2qg3tv5n59zfadgmgns426xj9evwerp5tgn2uv9zwpsqzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cmz7zh6 In reply to <a href='/nevent1qqsvp2hsev8v732f6ugtdccdagcc9cf6tkyqa375h5xu78juprsyggs0w25sl'>nevent1q…25sl</a><br/>_________________________<br/><br/>that’s the plan, I want it to be a community shared badge/icon for #rstats and broader GitHub repos. Hence the desire for peoples feedback on what design and text works best. I like the idea of simplifying/shortening the text 👍 2024-08-04T07:45:30Z https://yabu.me/nevent1qqsdflt3juyuhng3jugp2x30f7frz62ym533zu8qm4hfcgqym0t9hhqzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cdvdvsl In reply to <a href='/nevent1qqs2g5c7042jtr2lkf7d8dkju4hm3vymzeg8ug5kxnuwy8jlzj7753cyrtvrt'>nevent1q…tvrt</a><br/>_________________________<br/><br/>yeh settling on the text is the bit I’m struggling with the most… do we just keep it really simple and to the point. ‘All questions welcomed here’ 2024-08-04T01:58:58Z https://yabu.me/nevent1qqstuv7dnnasd8wysr0979dyplfkwf0sna4c6usyd062qp2sq9utqygzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cp2qd7c In reply to <a href='/nevent1qqsx9slyrwr9ztg0xzz6qjzsulr7vwtacyrw3xh28naa09u9k6s8g4gtfpuwq'>nevent1q…puwq</a><br/>_________________________<br/><br/>An initial 5min mock up… Suggestions on text, colours, circle or hexagon, alt designs? 🤔<br/>#rstats<br/> <img src="https://cdn.masto.host/genomicsocial/media_attachments/files/112/901/158/549/609/334/original/a88f385d0cc36097.jpeg"> <br/> 2024-08-04T01:29:41Z https://yabu.me/nevent1qqsx9slyrwr9ztg0xzz6qjzsulr7vwtacyrw3xh28naa09u9k6s8g4gzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84cdqmcl5 I’ve always like helping others with my #rstats packages 📦 It’s satisfying and a nice change to the usual work. Unfortunately I suspect some people are hesitant to reach out. Has anyone made a cool logo 🤩 to put on your GitHub repos that clearly communicates you are open to helping others use the repo/package regardless of skill level? 2024-08-03T00:12:25Z https://yabu.me/nevent1qqsg7kcnqzp09w4quj8khdh7vlzl3c5adnwvzyx2evt95wk2lcr8hmgzyqvw8vtg36dechmx9zxxezl4dpvzem9wy0q4ffkfl59y9vfrjy84c5527ag #Introduction Hi there 👋 I&#39;m Luke Pembleton, a Genomic Breeding Scientist &amp; Strategic Science Manager for a global seed company. Currently based in Melbourne 🇦🇺 but my timezone 🕒🌎 is variable &amp; you will often find me working in EU or US hrs. I enjoy all things 🧬 genomics, with a special focus on 🌱🐄 genomic selection &amp; breeding. R is my go-to language 💻 with a healthy side of Bash hacking. I also create cloud ☁️computing environments for research &amp; production pipelines with my wingman Nextflow 🔃 2023-07-20T17:02:21Z